Tools

This page contains the tools and software packages we have developed here at UCSF or previously at other institutions. Please visit our GitHub page for our latest releases.

Published Tools

TEISER

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A software packge for systematic discovery of functional structural elements in RNA.

iPAGE

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A suite of mutual information-based tools for module-level analysis of gene expression.

FIRE

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A motif discovery and characterization program based on mutual information, which was developed by Olivier Elemento and Noam Slonim in the Tavazoie lab. We have contributed to FIRE by expanding it to prokaryotic genomes.

Other Tools

iGET: Integrated Genomics Exploration Tools

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Web portal to a suite of tools for exploring biological pathways and DNA/RNA/protein regulatory elements associated with large-scale gene expression and protein behavior dynamics hosted by the Tavazoie lab at Columbia University.


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