Published Tools

TEISER

link
A software packge for systematic discovery of functional structural elements in RNA.

iPAGE

link
A suite of mutual information-based tools for module-level analysis of gene expression.

FIRE

link
A motif discovery and characterization program based on mutual information, which was developed by Olivier Elemento and Noam Slonim in the Tavazoie lab. We have contributed to FIRE by expanding it to prokaryotic genomes.

Other Tools

iGET: Integrated Genomics Exploration Tools

link
Web portal to a suite of tools for exploring biological pathways and DNA/RNA/protein regulatory elements associated with large-scale gene expression and protein behavior dynamics hosted by the Tavazoie lab at Columbia University.